This is the Linux app named SecStAnT to run in Linux online whose latest release can be downloaded as SecStAnT.jar. It can be run online in the free hosting provider OnWorks for workstations.
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SecStAnT to run in Linux online
DESCRIPTION
SecStAnT is a tool for the automatic creation of data-sets of structures from Protein Data Bank (PDB) with user-defined structural composition, and for the calculation of their internal variables distributions.SecStAnT is able to
1. Select from PDB data sets of structures based on user specified secondary structures (defined based on internal PDB classification or on DSSP) and/or sequence motives.
2. Build Data-sets at different levels of resolution (all atoms, only backbone, only Cα, ...)
3. Evaluate statistical distributions of internal variables:
a. single variable distributions (including the most relevant in the atomistic representation, e.g. PHI and PSI and a number of those for the Cα based representation)
b. two variables correlations (including the PHI-PSI Ramachandran map and its equivalent in the Cα based representation)
c. three variables correlations
User interface
Java Swing
Programming Language
Java
This is an application that can also be fetched from https://sourceforge.net/projects/secstant/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
