This is the Linux app named BLAST Ring Image Generator whose latest release can be downloaded as BRIG-0.95-dist.zip. It can be run online in the free hosting provider OnWorks for workstations.
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BLAST Ring Image Generator
DESCRIPTION
BRIG is a cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a focus on handling genome assembly data.Please cite the BRIG paper if BRIG is used to generate figures for publications: NF Alikhan, NK Petty, NL Ben Zakour, SA Beatson (2011) BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons, BMC Genomics, 12:402. PMID: 21824423
Features
- Images show similarity between a central reference sequence and other sequences as concentric rings.
- BRIG will perform all BLAST comparisons and file parsing automatically via a simple GUI.
- Contig boundaries and read coverage can be displayed for draft genomes; customized graphs and annotations can be displayed.
- Using a user-defined set of genes as input, BRIG can display gene presence, absence, truncation or sequence variation in a set of complete genomes, draft genomes or even raw, unassembled sequence data.
- BRIG also accepts SAM-formatted read-mapping files enabling genomic regions present in unassembled sequence data from multiple samples to be compared simultaneously
Audience
Science/Research
Programming Language
Java
This is an application that can also be fetched from https://sourceforge.net/projects/brig/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
