This is the Linux app named MDcons(Molecular Dynamics consensus) whose latest release can be downloaded as mdcons-src-2.0.tar.gz. It can be run online in the free hosting provider OnWorks for workstations.
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MDcons(Molecular Dynamics consensus)
DESCRIPTION
MDcons is a tool to analyze conserved contacts during Molecular Dynamics (MD) simulations of Protein, Rna, Dna & Ligand based complexes. The input is either a Molecular Dynamics trajectory or a set of snapshots. The input can also be a single snapshot. The outputs are (1) map of most/less frequently conserved contacts during MD (2) a list of most/less frequently conserved contacts during MD.
Features
- MDcons runs on 2000+ MD snapshots in less than 2 minutes
- MDcons handles both Protein, RNA and DNA complexes
- MDcons handles trajectories/snapshots with or without chain identifyer
- MDcons is compatible with GROMACS
Audience
Science/Research
User interface
Console/Terminal, Command-line
Programming Language
Fortran, Python
Categories
This is an application that can also be fetched from https://sourceforge.net/projects/mdcons/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
