This is the Windows app named VCF Explorer to run in Windows online over Linux online whose latest release can be downloaded as VCFExplorer.tar.gz. It can be run online in the free hosting provider OnWorks for workstations.
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- 7. Download Wine from your Linux distributions software repositories. Once installed, you can then double-click the app to run them with Wine. You can also try PlayOnLinux, a fancy interface over Wine that will help you install popular Windows programs and games.
Wine is a way to run Windows software on Linux, but with no Windows required. Wine is an open-source Windows compatibility layer that can run Windows programs directly on any Linux desktop. Essentially, Wine is trying to re-implement enough of Windows from scratch so that it can run all those Windows applications without actually needing Windows.
SCREENSHOTS
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VCF Explorer to run in Windows online over Linux online
DESCRIPTION
he decreasing cost high-throughput technologies led to a number of sequencing projects consisting thousands of whole genomes. The paradigm shift from exome to whole genome brings a significant increase in the size of output files. Most of the existing tools which are developed to analyze exome files are not adequate for large VCF files produced by whole genome studies. In this work we present VCF-Explorer, a variant analysis software capable of handling large files. Efficient memory management of the program and the elimination of preliminary parsing step enable to carry out the analysis at ordinary computers. VCF-Explorer presents an easy to use environment where various types of queries for the annotation and the samples can be defined. VCF-Explorer can be run at different environments and computational platforms ranging from a standard laptop to an advanced server.Features
- An easy to use environment
- Efficient memory management
- Large (Whole Genome) VCF file processing
- Operable on personal computer having limited computational resources
User interface
Qt
Programming Language
C++, C
This is an application that can also be fetched from https://sourceforge.net/projects/vcfexplorer/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
