EnglishFrenchSpanish

OnWorks favicon

primae - Online in the Cloud

Run primae in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command primae that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


prima - Selects primers for PCR and DNA amplification.

SYNOPSIS


prima -sequence sequence -targetrange toggle -targetstart integer -targetend integer
-mintmprimer float -maxtmprimer float -minplen integer -maxplen integer
-minpgccont float -maxpgccont float [-primer toggle] -minprimerlen integer
-maxprimerlen integer -minpmgccont float -maxpmgccont float -overlap integer
-saltconc float -dnaconc float -list boolean -outfile outfile

prima -help

DESCRIPTION


prima is a command line program from EMBOSS (“the European Molecular Biology Open Software
Suite”). It is part of the "Nucleic:Primers" command group(s).

OPTIONS


Input section
-sequence sequence

Required section
Target options
-targetrange toggle
Default value: N

-targetstart integer
Default value: $(sequence.begin)

-targetend integer
Default value: $(sequence.length)

-mintmprimer float
Default value: 53

-maxtmprimer float
Default value: 58

Additional section
Product options
-minplen integer
Default value: 100

-maxplen integer
Default value: 300

-minpgccont float
Default value: .40

-maxpgccont float
Default value: .55

Primer options
-primer toggle
Specify primer properties Default value: Y

-minprimerlen integer
Default value: 18

-maxprimerlen integer
Default value: 22

-minpmgccont float
Default value: .40

-maxpmgccont float
Default value: .55

Advanced section
-overlap integer
Default value: 50

-saltconc float
Default value: 50

-dnaconc float
Default value: 50

-list boolean
Default value: N

Output section
-outfile outfile

Use primae online using onworks.net services


Free Servers & Workstations

Download Windows & Linux apps

  • 1
    strace
    strace
    The strace project has been moved to
    https://strace.io. strace is a
    diagnostic, debugging and instructional
    userspace tracer for Linux. It is used
    to monitor a...
    Download strace
  • 2
    gMKVExtractGUI
    gMKVExtractGUI
    A GUI for mkvextract utility (part of
    MKVToolNix) which incorporates most (if
    not all) functionality of mkvextract and
    mkvinfo utilities. Written in C#NET 4.0,...
    Download gMKVExtractGUI
  • 3
    JasperReports Library
    JasperReports Library
    JasperReports Library is the
    world's most popular open source
    business intelligence and reporting
    engine. It is entirely written in Java
    and it is able to ...
    Download JasperReports Library
  • 4
    Frappe Books
    Frappe Books
    Frappe Books is a free and open source
    desktop book-keeping software that's
    simple and well-designed to be used by
    small businesses and freelancers. It'...
    Download Frappe Books
  • 5
    Numerical Python
    Numerical Python
    NEWS: NumPy 1.11.2 is the last release
    that will be made on sourceforge. Wheels
    for Windows, Mac, and Linux as well as
    archived source distributions can be fou...
    Download Numerical Python
  • 6
    CMU Sphinx
    CMU Sphinx
    CMUSphinx is a speaker-independent large
    vocabulary continuous speech recognizer
    released under BSD style license. It is
    also a collection of open source tools ...
    Download CMU Sphinx
  • More »

Linux commands

crm
crm
Use crm online using onworks.net
services. ...
Run crm
  • 4
    crmgr
    crmgr
    crmgr - administration utility for QDBM
    Curia ...
    Run crmgr
  • 5
    gappletviewer
    gappletviewer
    gappletviewer - Load and runs an applet
    ...
    Run gappletviewer
  • 6
    gaps
    gaps
    mummer - package for sequence alignment
    of multiple genomes ...
    Run gaps
  • s-processed="true">
    g15stats
    g15stats - A CPU/Memory/Swap usage
    meter for G15Daemon DESCRIPTION: The
    packages provides the following usage
    meter for LCD on some Logitech
    keyboards, usind g...
    Run g15stats
  • More »
  • Ad