This is the Linux app named PRIMUS to run in Linux online whose latest release can be downloaded as URLtoLastestPRIMUSversion.txt. It can be run online in the free hosting provider OnWorks for workstations.
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PRIMUS to run in Linux online
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DESCRIPTION
NEW: Download new version with Pedigree Reconstruction at primus.gs.washington.eduThis versions is outdated and incomplete. Please visit the new website for the complete version of PRIMUS.
We present a method adapted from graph theory that always identifies the maximum set of unrelated individuals in any dataset, and allows weighting parameters to be utilized in unrelated sample selection. PRIMUS reads in user-generated IBD estimates and outputs the maximum possible set of unrelated individuals, given a specified threshold of relatedness. Additional information for preferential selection of individuals may also be utilized. For example, when there are two equally sized maximum sets of unrelated individuals in a network, PRIMUS can preferentially select the set with more affected individuals.
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Relevant software:
http://students.washington.edu/jeanm5/Simulate_IBD_Python.ta
Features
- Identifies maximum unrelated set of individuals from a genetic dataset
- Groups samples into family networks
- Generates .dot files to visualize family networks
Audience
Healthcare Industry, Science/Research, Education
Programming Language
Perl
This is an application that can also be fetched from https://sourceforge.net/projects/primus-beta/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
