This is the command parseval that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
parseval - comparative analysis of two alternative sources of annotation
SYNOPSIS
parseval [options] reference.gff3 prediction.gff3
DESCRIPTION
Basic options:
-d|--debug:
Print debugging messages
-h|--help:
Print help message and exit
-l|--delta: INT
Extend gene loci by this many nucleotides; default is 0
-V|--verbose:
Print verbose warning messages
-v|--version:
Print version number and exit
Output options:
-a|--datashare: STRING
Location from which to copy shared data for HTML output (if `make install' has not
yet been run)
-f|--outformat: STRING
Indicate desired output format; possible options: 'csv', 'text', or 'html'
(default='text'); in 'text' or 'csv' mode, will create a single file; in 'html'
mode, will create a directory
-g|--nogff3:
Do no print GFF3 output corresponding to each comparison
-o|--outfile: FILENAME
File/directory to which output will be written; default is the terminal (STDOUT)
-p|--nopng:
In HTML output mode, skip generation of PNG graphics for each gene locus
-s|--summary:
Only print summary statistics, do not print individual comparisons
-w|--overwrite:
Force overwrite of any existing output files
-x|--refrlabel: STRING
Optional label for reference annotations
-y|--predlabel: STRING
Optional label for prediction annotations
Filtering options:
-k|--makefilter
Create a default configuration file for filtering reported results and quit,
performing no comparisons
-r|--filterfile: STRING
Use the indicated configuration file to filter reported results;
-t|--maxtrans: INT
Maximum transcripts allowed per locus; use 0 to disable limit; default is 32
Use parseval online using onworks.net services
