This is the command fprotparse that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
fprotpars - Protein parsimony algorithm
SYNOPSIS
fprotpars -sequence seqsetall -intreefile tree [-weights properties] -njumble integer
-seed integer [-outgrno integer] [-thresh toggle] -threshold float
[-whichcode list] -outfile outfile [-trout toggle] -outtreefile outfile
[-printdata boolean] [-progress boolean] [-treeprint boolean] [-stepbox boolean]
[-ancseq boolean] -dotdiff boolean
fprotpars -help
DESCRIPTION
fprotpars is a command line program from EMBOSS (“the European Molecular Biology Open
Software Suite”). It is part of the "Phylogeny:Molecular sequence" command group(s).
OPTIONS
Input section
-sequence seqsetall
File containing one or more sequence alignments
-intreefile tree
-weights properties
Additional section
-njumble integer
-seed integer
Default value: 1
-outgrno integer
-thresh toggle
Default value: N
-threshold float
Default value: 1
-whichcode list
Default value: Universal
Output section
-outfile outfile
-trout toggle
Default value: Y
-outtreefile outfile
-printdata boolean
Default value: N
-progress boolean
Default value: Y
-treeprint boolean
Default value: Y
-stepbox boolean
Default value: N
-ancseq boolean
Default value: N
-dotdiff boolean
Default value: Y
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