This is the command kmc_tools-sort that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
kmc_tools-sort - sort KMC databases
SYNOPSIS
kmc_tools sort <inputdb> [input_params] <output> [output_params]
DESCRIPTION
Converts database produced by KMC2.x to KMC1.x database format (which contains k-mers in
sorted order)
OPTIONS
For each input there are additional parameters:
-ci<value>
exclude k-mers occurring less than <value> times
-cx<value>
exclude k-mers occurring more of than <value> times
For output there are additional parameters:
-cs<value>
maximal value of a counter
EXAMPLE
kmc_tools sort wy_kmc2 -ci3 -cx1000 wy_kmc1 -cs255
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