This is the command last-dotplot that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
last-dotplot - make a dotplot, a.k.a. Oxford Grid, of alignments in LAST tabular format
SYNOPSIS
last-dotplot --help
last-dotplot [options] maf-or-tab-alignments dotplot.png
last-dotplot [options] maf-or-tab-alignments dotplot.gif
...
DESCRIPTION
Draw a dotplot of pair-wise sequence alignments in MAF or tabular format.
OPTIONS
-h, --help
show this help message and exit
-1 PATTERN, --seq1=PATTERN
which sequences to show from the 1st genome
-2 PATTERN, --seq2=PATTERN
which sequences to show from the 2nd genome
-x WIDTH, --width=WIDTH
maximum width in pixels (default: 1000)
-y HEIGHT, --height=HEIGHT
maximum height in pixels (default: 1000)
-f FILE, --fontfile=FILE
TrueType or OpenType font file
-s SIZE, --fontsize=SIZE
TrueType or OpenType font size (default: 11)
-c COLOR, --forwardcolor=COLOR
color for forward alignments (default: red)
-r COLOR, --reversecolor=COLOR
color for reverse alignments (default: blue)
Unsequenced gap options:
--gap1=FILE
read genome1 unsequenced gaps from agp or gap file
--gap2=FILE
read genome2 unsequenced gaps from agp or gap file
--bridged-color=COLOR
color for bridged gaps (default: yellow)
--unbridged-color=COLOR
color for unbridged gaps (default: pink)
Use last-dotplot online using onworks.net services
