This is the command last-map-probs that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
last-map-probs - Add extra column with mapping probabilities
SYNOPSIS
last-map-probs [options] lastal-alignments
DESCRIPTION
Calculate a mismap probability for each alignment. This is the probability that the
alignment does not reflect the origin of the query sequence, assuming that one reported
alignment does reflect the origin of each query.
OPTIONS
-h, --help
show this help message and exit
-m M, --mismap=M
don't write alignments with mismap probability > M (default: 0.01)
-s S, --score=S
don't write alignments with score < S (default: e+t*ln[1000])
Use last-map-probs online using onworks.net services
