This is the command predictnls that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
predictnls - prediction and analysis of nuclear localization signals
SYNOPSIS
predictnls [OPTION]
DESCRIPTION
predictnls is a method for the prediction and analysis of nuclear localization signals
(NLS)
Output format
Self-annotating, see example outputs in /usr/share/doc/predictnls/examples.
REFERENCES
Cokol, M., Nair, R., and Rost, B. (2000). Finding nuclear localization signals. EMBO Rep,
1(5), 411-5.
OPTIONS
debug=[0|1]
fileIn=<FILE>
Input file in fasta format. Required. Only one sequence per file.
fileOut=<FILE>
Output file. Required.
help
html=[0|1|2]
Output format. 0 - text; 1 - html; 2 - both. Default: 0.
If both outputs are requested, the text file is named according to the value of
fileOut and the html file gets an `.html' extension.
fileSummary=<FILE>
If set `1' is written into this file if an NLS is found, `0' otherwise. Optional.
nlsdat=<FILE>
Raw nls data, optional
version
Print version.
EXAMPLES
"predictnls fileIn=/usr/share/doc/predictnls/examples/O49931.fa fileOut=/tmp/O49931.nls"
ENVIRONMENT
PREDICTNLSCONF
Location of predictnlsrc configuration file to use overriding other configuration
files
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