predictnls - Online in the Cloud

This is the command predictnls that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


predictnls - prediction and analysis of nuclear localization signals

SYNOPSIS


predictnls [OPTION]

DESCRIPTION


predictnls is a method for the prediction and analysis of nuclear localization signals
(NLS)

Output format
Self-annotating, see example outputs in /usr/share/doc/predictnls/examples.

REFERENCES


Cokol, M., Nair, R., and Rost, B. (2000). Finding nuclear localization signals. EMBO Rep,
1(5), 411-5.

OPTIONS


debug=[0|1]
fileIn=<FILE>
Input file in fasta format. Required. Only one sequence per file.

fileOut=<FILE>
Output file. Required.

help
html=[0|1|2]
Output format. 0 - text; 1 - html; 2 - both. Default: 0.

If both outputs are requested, the text file is named according to the value of
fileOut and the html file gets an `.html' extension.

fileSummary=<FILE>
If set `1' is written into this file if an NLS is found, `0' otherwise. Optional.

nlsdat=<FILE>
Raw nls data, optional

version
Print version.

EXAMPLES


"predictnls fileIn=/usr/share/doc/predictnls/examples/O49931.fa fileOut=/tmp/O49931.nls"

ENVIRONMENT


PREDICTNLSCONF
Location of predictnlsrc configuration file to use overriding other configuration
files

Use predictnls online using onworks.net services



Latest Linux & Windows online programs