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pymvpa2-ttest - Online in the Cloud

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PROGRAM:

NAME


pymvpa2-ttest - simple t-test routine

SYNOPSIS


pymvpa2 ttest [--version] [-h] -i DATASET [DATASET ...] [-m MASK] -o OUTPUT [-c
CHANCE_LEVEL] [-s {t,z,p}] [-a {greater,less,two-sided}] t-test across multiple volumes
against some chance level

DESCRIPTION


This is a rudimentary way to perform fixed-effect significance test across subjects on
e.g. searchlight results maps.

OPTIONS


--version
show program's version and license information and exit

-h, --help, --help-np
show this help message and exit. --help-np forcefully disables the use of a pager
for displaying the help.

-i DATASET [DATASET ...], --input DATASET [DATASET ...]
path(s) to one or more PyMVPA dataset files. All datasets will be merged into a
single dataset (vstack'ed) in order of specification. In some cases this option may
need to be specified more than once if multiple, but separate, input datasets are
required.

-m MASK, --mask MASK
single mask item

-o OUTPUT, --output OUTPUT
output filename ('.hdf5' extension is added automatically if necessary).

-c CHANCE_LEVEL, --chance-level CHANCE_LEVEL
chance level performance

-s {t,z,p}, --stat {t,z,p}
Store corresponding statistic, e.g. z-value corresponding to the original t-value

-a {greater,less,two-sided}, --alternative {greater,less,two-sided}
Which tail of the distribution 'interesting' values belong to. E.g. if values are
accuracies, it would be the 'greater', if errors -- the 'less'

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