This is the Linux app named genppi whose latest release can be downloaded as XRSSfeedforfil. It can be run online in the free hosting provider OnWorks for workstations.
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SCREENSHOTS
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genppi
DESCRIPTION
Our software GENPPI is efficient because, for example, it creates interaction networks from the central genome of 50 species/lineages of Corynebacterium, with an average size of 2200 genes, in less than 40 minutes, on a conventional computer. Our software is compelling because the interaction networks that it creates reflect evolutionary relationships between species and obtained in Average Nucleotide Identity (ANI) analyzes. Also, It allows the user to define how he intends to explore the PP and CN characteristics through various parameters that let on the creation of customized interaction networks. For instance, one can set parameters regarding the genus, metagenome, or pangenome. In addition to the parameterization of GENPPI, it is also the user's choice what set of genomes he is going to study.
Please, to obtain the software and tutorials access: https://genppi.facom.ufu.br
Features
- Standalone
- No external dependecies
- Fast
- Open source
- Command line
- Linux
- Windows
- Macintosh
- Steel Bank Common Lisp (SBCL)
- Common Lisp
- GEPHI
- Cytoscape
- R statistical software
Audience
Science/Research
User interface
Command-line
Programming Language
Common Lisp
Categories
This is an application that can also be fetched from https://sourceforge.net/projects/genppi/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
