last-map-probs - Online in the Cloud

PROGRAM:

NAME

last-map-probs - Add extra column with mapping probabilities

SYNOPSIS

last-map-probs [options] lastal-alignments

DESCRIPTION

Calculate a mismap probability for each alignment. This is the probability that the
alignment does not reflect the origin of the query sequence, assuming that one reported
alignment does reflect the origin of each query.

OPTIONS

-h, --help
show this help message and exit

-m M, --mismap=M
don't write alignments with mismap probability > M (default: 0.01)

-s S, --score=S
don't write alignments with score < S (default: e+t*ln[1000])

Use last-map-probs online using onworks.net services