This is the Linux app named MIRA whose latest release can be downloaded as mira-4.0.2.tar.bz2. It can be run online in the free hosting provider OnWorks for workstations.
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MIRA
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DESCRIPTION
MIRA - Sequence assembler and sequence mapping for whole genome shotgun and EST / RNASeq sequencing data. Can use Sanger, 454, Illumina and IonTorrent data. PacBio: CCS and error corrected data usable, uncorrected not yet.
Features
- Allows hybrid assemblies of Sanger, 454, Solexa, IonTorrent and PacBio (CCS & ecCLR) data
- Can use paired-end and / or unpaired data
- Supports ancillary data in TRACEINFO format (from NCBI)
- Marks places of interest with tags so that these can be found quickly in finishing programs
- Has a SNP analysis pipeline for sequencing data of viruses and procaryonts
Audience
Advanced End Users, Science/Research
User interface
Command-line
Programming Language
C++
Categories
This is an application that can also be fetched from https://sourceforge.net/projects/mira-assembler/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
